PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875585
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 1229aa    MW: 135644 Da    PI: 6.6727
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875585genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22141242199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  462875585 141 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKQQLL 236
                99*****************************954.4444.48************************************************..5688889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462875585 237 LGIRRA 242
                ***997 PP

2Auxin_resp118.26.9e-39267350183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
   462875585 267 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 350
                 79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-42130270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-41133256IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-19140232No hitNo description
SMARTSM010192.4E-22141243IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829141243IPR003340B3 DNA binding domain
PfamPF023623.8E-20141242IPR003340B3 DNA binding domain
PfamPF065071.2E-33267350IPR010525Auxin response factor
PfamPF023091.7E-910121098IPR033389AUX/IAA domain
PROSITE profilePS5174527.44810131097IPR000270PB1 domain
SuperFamilySSF542772.55E-710251092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1229 aa     Download sequence    Send to blast
MMKQQQQPAS SAGPTAGGGG ASAVCAGEKK APTINSELWH ACAGPLVSLP PAGSLVVYFP  60
QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG  120
KEALQLSELA LKQPRPQTEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE  180
IQARDLHDNI WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR  240
RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA  300
LYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE  360
RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP  420
QTQNTIMPGL SLVQWMNMNM QQNSSFANTA VQSEYLRSLS NPNMQNLGAS DLSRQLCLQN  480
QILQQNNIQF NSPKLPQQMQ PINELPKAAL AQNQLVGGIK PQEQTQEPSN LQRQQQSLNQ  540
LLPLSQSQTS LVQAQVLAQS QMQQQQPPSV TQNLKPATSQ PLLLPHQQQQ QQQQQQQQPK  600
LLQQQQQQQQ QLLLQQQQLQ QQSQLNKMPA QVQNLVNQQM QLPDQQLQLQ LLQKLQQQQQ  660
SLLSQPGVTL AQLPLIQEQQ KLFLDVQQQL SNSHSLSQQQ TMPQQSTKVA SQATPPPPAM  720
QQESPQKLPQ KHVGFADSSQ AAIPPPTSVN IVSGAGSPLM TTGATHSVLT EEIPSCSTSP  780
STANGNHLLQ PVLGRNKQCG MMNNEKVPQS NAPMSIPCSL EAIMAPARLT KESPKLNSSV  840
KQSLMTSKPP NAGTGPQNFV NGVPPTDYLE TASSATSVWL SQTDGLLHQG FPMSNFNQQQ  900
MFKDAPPETE IQGADASNHA LFGINSDGQL GFPMGADGFL SNGIDAAKYE NHISTDIDGN  960
YRIPKDAQQE ISSSMVSQSI GASDMAFNSI DSAINDGAFR TSWPPAAPLK RMRTFTKVYK  1020
RGAVGRSIDI SQFSGYDELK HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW  1080
EEFVNCVKCI RILSPQEVQQ MSLDGDLGNN ILPNQACSSS DGGNAWRARC DQNSGNPSTG  1140
SYDQFPHMEV GMIIQPHCQY NSSRGDLGNN ILPNQACSSS DGGNAWRARC DQNSGNPSTG  1200
SYDQFPHMEV GMIPADEKNL ELSHRSTAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1672637144388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437545.10.0hypothetical protein SORBIDRAFT_10g029130
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLC5Z9810.0C5Z981_SORBI; Auxin response factor
STRINGSb10g029130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19